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[1]赵佳奇,石萌,向嵩.Bre1与Rad6形成的复合物的表达、纯化和结晶[J].天津医科大学学报,2023,29(01):83-87.
 ZHAO Jia-qi,SHI Meng,XIANG Song.Expression,purification and crystallization of Bre1-Rad6 complex[J].Journal of Tianjin Medical University,2023,29(01):83-87.
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Bre1与Rad6形成的复合物的表达、纯化和结晶(PDF)
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《天津医科大学学报》[ISSN:1006-8147/CN:12-1259/R]

卷:
29卷
期数:
2023年01期
页码:
83-87
栏目:
技术与方法
出版日期:
2023-01-20

文章信息/Info

Title:
Expression,purification and crystallization of Bre1-Rad6 complex
文章编号:
1006-8147(2023)01-0083-05
作者:
赵佳奇石萌向嵩
(天津医科大学基础医学院生物化学与分子生物学系,天津 300070)
Author(s):
ZHAO Jia-qiSHI MengXIANG Song
(Department of Biochemistry and Molecular Biology,School of Basic Medical Sciences,Tianjin Medical University,Tianjin 300070,China)
关键词:
Bre1Rad6泛素化修饰蛋白质纯化蛋白质结晶
Keywords:
Bre1Rad6ubiquitinationprotein purificationprotein crystallization
分类号:
Q71
DOI:
-
文献标志码:
A
摘要:
目的:建立Bre1及Rad6的表达和纯化方法,构建Bre1-Rad6的复合物,寻找复合物的结晶条件,为使用X射线晶体学的方法解析复合物的结构奠定基础。方法:使用大肠杆菌表达系统表达蛋白质;使用共纯化的方法组装复合物;使用气象扩散的方法结晶复合物。结果:建立了来源于Lodderomyces elongisporus的Bre1(LeBre1)氮端与Rad6相互作用的结构域(RBD)和Rad6(LeRad6)在大肠杆菌中大量表达的方法;通过使用共纯化的方法,成功组装了LeBre1 RBD-Rad6复合物,并进一步通过两步凝胶过滤层析纯化的方法精细纯化,获得了纯度超过95%的蛋白复合物;使用气象扩散的方法结晶复合物,在18℃通过对1 000多个结晶条件的筛选,确定了复合物的两种结晶条件,进一步对该条件优化,获得了质量相对较好的晶体。结论:成功的构建了LeBre1 RBD-Rad6复合物的表达、纯化和结晶的方法,为使用X射线晶体学方法解析复合物的结构奠定了基础。
Abstract:
Objective:To establish the expression, and purification protocol for the Bre1-Rad6 complex,construct the Bre1-Rad6 complex; search for its crystallization condition to provide a starting point for structure determination of the complex with X-ray crystallography. Methods:The Escherichia coli host was used for the recombinant expression of protein,the complex was assembled by co-purification,the vapor diffusion method was used for complex crystallization. Results:The Lodderomyces elongisporus Bre1(LeBre1) N-terminal Rad6 binding domain(RBD) and Rad6(LeRad6) can be expressed separately in large amounts in Escherichia. coli cells. The LeBre1 RBD-Rad6 complex was assembled with affinity co-purification. The complex was further purified to more than 95% purity with two-step gel filtration chromatography. The compound was crystallized by the method of meteorological diffusion. More than 1 000 crystallization conditions were screened at 18℃,two crystallization conditions for the complex were identified. After optimizing the crystallization condition,relatively good quality crystals were obtained. Conclusion:The expression,purification and crystallization protocol for the LeBre1 RBD-Rad6 complex is established. Such protocol provides a starting point for future structural determination of the complex with X ray crystallography.

参考文献/References:

[1] LUGER K,MDER A W,RICHMOND R K,et al. Crystal structure of the nucleosome core particle at 2.8A resolution[J]. Nature,1997,389(6648):251-260.
[2] STRAHL B D,ALLIS C D. The language of covalent histone modifications[J]. Nature,2000,403(6765):41-45.
[3] KOUZARIDES T. Chromatin modifications and their function[J]. Cell,2007,128(4):693-705.
[4] TWEEDIE-CULLEN R Y,RECK J M,MANSUY I M. Comprehensive mapping of post-translational modifications on synaptic,nuclear,and histone proteins in the adult mouse brain[J]. J Proteome Res,2009,8(11):4966-4982.
[5] DENG Z H,AI H S,LU C P,et al. The Bre1/Rad6 machinery:writing the central histone ubiquitin mark on H2B and beyond[J]. Chromosome Res,2020,28(3/4):247-258.
[6] FUCHS G,OREN M. Writing and reading H2B monoubiquitylation[J]. Biochim Biophys Acta,2014,1839(8):694-701.
[7] KATO A,KOMATSU K. RNF20-SNF2H Pathway of chromatin relaxation in DNA double-strand break repair[J]. Genes(Basel),2015,6(3):592-606.
[8] UCKELMANN M,SIXMA T K. Histone ubiquitination in the DNA damage response[J]. DNA Repair(Amst),2017,56:92-101.
[9] WANG L,CAO C,WANG F,et al. H2B ubiquitination:conserved molecular mechanism,diverse physiologic functions of the E3 ligase during meiosis[J]. Nucleus,2017,8(5):461-468.
[10] SERRANO-QUILEZ J,ROIG-SOUCASE S,RODRIGUEZ-NAVARRO S. Sharing marks:H3K4 methylation and H2B ubiquitination as features of meiotic recombination and transcription[J]. Int J Mol Sci,2020,21(12):4510.
[11] MARSH D J,MA Y,DICKSON K A. Histone monoubiquitination in chromatin remodelling:focus on the histone H2B interactome and cancer[J]. Cancers(Basel),2020,12(11):3462.
[12] MARSH D J,DICKSON K A. Writing histone monoubiquitination in human malignancy-the role of RING finger E3 ubiquitin ligases[J]. Genes (Basel),2019,10(1):67.
[13] ZHOU S,CAI Y,LIU X,et al. Role of H2B mono-ubiquitination in the initiation and progression of cancer[J]. Bull Cancer,2021,108(4):385-398.
[14] HWANG W W,VENKATASUBRAHMANYAM S,IANCULESCU A G,et al. A conserved RING finger protein required for histone H2B monoubiquitination and cell size control[J]. Mol Cell,2003,11(1):261-266.
[15] WOOD A,KROGAN N J,DOVER J,et al. Bre1,an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter[J]. Mol Cell,2003,11(1):267-274.
[16] KIM J,HAKE S B,ROEDER R G. The human homolog of yeast BRE1 functions as a transcriptional coactivator through direct activator interactions[J]. Mol Cell,2005,20(5):759-770.
[17] ZHU B,ZHENG Y,PHAM A D,et al. Monoubiquitination of human histone H2B:the factors involved and their roles in HOX gene regulation[J]. Mol Cell,2005,20(4):601-611.
[18] ZHENG N,SHABEK N. Ubiquitin ligases:structure,function,and regulation[J]. Annu Rev Biochem,2017,86:129-157.
[19] KIM J,ROEDER R G. Direct Bre1-Paf1 complex interactions and RING finger-independent Bre1-Rad6 interactions mediate histone H2B ubiquitylation in yeast[J]. J Biol Chem,2009,284(31):20582-20592.
[20] TURCO E,GALLEGO L D,SCHNEIDER M,et al. Monoubiquitination of histone H2B is intrinsic to the Bre1 RING domain-Rad6 interaction and augmented by a second Rad6-binding site on Bre1[J]. J Biol Chem,2015,290(9):5298-5310.
[21] CHAYEN N E,SARIDAKIS E. Protein crystallization:from purified protein to diffraction-quality crystal[J]. Nat Methods,2008,5(2):147-153.

相似文献/References:

[1]石萌,向嵩.核小体泛素连接酶Bre1的eRING结构域与泛素转移酶Rad6的相互作用研究[J].天津医科大学学报,2023,29(01):31.
 SHI Meng,XIANG Song.Biochemical charterization of the interaction between the eRING domain in the nucleosome ubiquitin ligase Bre1 and the ubiquitin conjugating enzyme Rad6[J].Journal of Tianjin Medical University,2023,29(01):31.

备注/Memo

备注/Memo:
作者简介:赵佳奇(1995-),女,硕士在读,研究方向:结构生物学;通信作者:向嵩,E-mail:xiangsong@tmu.edu.cn。
更新日期/Last Update: 2023-02-01